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a2mgaps

Plot MSA gap statistics from an a2m file

create-demo

Example of building Sphinx docs to GitHub Pages

datameta

diaproteomics

Automated quantitative analysis of DIA proteomics mass spectrometry measurements.

dirvish-on-demand

A wrapper for dirvish to enable on demand backups of clients in the local network

dodreporter

drs3

entrezdownloader

Parallel Entrez Downloads

epitopeprediction

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

fred

Python-based framework for computational immunomics

hmmer2pdf

Plotting tool for HMMER3 hmm files based on TikZ

httpx

A next generation HTTP client for Python. 🦋

ig-msa-tools

immunonodes

Immunoinformatics extension for KNIME

imseq

IMSEQ - IMmunogenetic SEQuence Analysis

linkml

Linked Open Data Modeling Language

linkml-runtime

Runtime support for linkml generated models

mhcquant

Identify and quantify peptides from mass spectrometry raw data

multihla

WES HLA Typing based on multiple alternative tools

openms

The codebase of the OpenMS project

optitype

Precision HLA typing from next-generation sequencing data

percolator

Semi-supervised learning for peptide identification from shotgun proteomics datasets

pre-commit-hooks

Some out-of-the-box hooks for pre-commit

pureclip

Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data

pyramid

Pyramid - A Python web framework

pyramid_openapi3

Pyramid addon for OpenAPI3 validation of requests and responses.

pyramid_tm

Centralized transaction management for Pyramid applications (without middleware)

pytags_sandbox

seqan

SeqAn's official repository.

shogun

The Shogun Machine Learning Toolbox (Source Code)