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2017-cicese-metagenomics

2017-davis-ggg201a-day2

These lessons are adapted from Data Carpentry: R for data analysis and visualization of Ecological Data

2018-ggg201a

Introduction to R lessons

361division

361 Division - Scientific Training, Education and Learning

aging-omics

assembly-stats

Get assembly statistics from FASTA and FASTQ files

awesome-bioinformatics-tools

A curated list of awesome Bioinformatics software, tools and resources

barrnap

:microscope: :leo: Bacterial ribosomal RNA predictor

bd_project

Multi-omics analyses of serum metabolome, gut microbiome and brain function reveal dysregulated microbiota-gut-brain axis in bipolar disorder

bioinformatics-resources

ftpcopy

hcluster

My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/

hsmg

Code related to A human skin microbiome reference catalog and the skin microbial landscape of plateau adults

integrated-skin-gene-catalog-analysis-pipeline

Integrated skin gene catalog(ISGC) pipeline to characterize a set of skin microbial gene catalog using the workflow described in the following publication:

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

mgs-canopy-algorithm

Fork of the canopy clustering algorithm of Nielsen et al.

ncbitax2lin

Convert NCBI taxonomy dump into lineages

python

Python script

r-script

skinmetagenome

table2itol

Generating iToL annotations from Spreadsheet or CSV files

test_repo

this-is-test_repo

tre-nafld

uhsg

Unified human skin genome (UHSG) construction process and microbial genome analysis process.

weighted-modularity-lpawbplus

Algorithms for finding weighted modularity in bipartite networks