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LiyanJi's Projects

bismark icon bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

compath icon compath

deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma"

datahub icon datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

evolution icon evolution

Code accompanying The Evolutionary history of 2,658 cancers

maftools icon maftools

Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

muc-m1 icon muc-m1

Comprehensive analysis highlighted and verified the robust predictive value of Macrophage M1 and its essential role in immunophenotype determination among patients with mUC.

sclc_mrs icon sclc_mrs

This is the R script for "Multi-region exome sequencing reveals the intratumoral heterogeneity of surgically resected small cell lung cancer"

tx100_compath icon tx100_compath

statistical analyses and figures code provided for the publication "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma"

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