liuy12 Goto Github PK

bbd_generead

Scripts and data for paper "Somatic mutations in benign breast disease tissues and association with breast cancer risk"

bioinformaticspracticum2015

Slides for Bioinformatics practicum 2015

blog

just another blog

bringd32biology

Bring D3 visualization to biolgy

cbioportal

cBioPortal for Cancer Genomics

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

dapars

DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)

deephyper_explore

Exploring deephyper.

dvboost

DVboost R package

dvboost_files

Annotation files and script used for DVboost

ffpeinput

Input recommendations for FFPE samples to generate adequate data for RNA-seq

gbm

Gradient boosted models

images

Interesting images

kaggle

Kaggle competition

liuy12.github.io

✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com

liuy12.github.io.old

Start blogging now

mbddiff

mbddiff_files

Background annotation files used for MBDDiff

nihgcn

Predicting cancer drug response using parallel heterogeneous graph convolutional networks with neighborhood interactions

pathdsp

Explainable Drug Sensitivity Prediction through Cancer Pathway Enrichment Scores

pdx_paper

datasets used for PDX paper

polyester

RNA-seq read simulator

practicalmachinelearningproject

scaden

Deep Learning based cell composition analysis with Scaden.

scdeconr

Deconvolution of bulk RNA-seq data using single-cell RNA-seq data as reference

scrna-seqvis

web application for scRNA-seq analysis enhanced with interactive visualization

singularity

Singularity definitions that can be extended to support execution of community models.

stcrnaseq

Raw count and processed data for paper Chronic renal ischemia alters gene expression in swine scattered tubular-like cells

userinshiny

An example of shiny application with user authentication