liudonglianghi Goto Github PK

acid-amine-enumeration

Code for Acid Amine Enumeration Paper

advancesyntoolkit

Toolkit for Modelling and Simulation of Gene Expressions and Metabolism

ai_notes

machine learning/artificial intelligence notes

amazon-sagemaker-examples

Example notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker

bigg-docker

bigg_models

The BiGG Models website server

bigg_models_data

The flat files for the BiGG Models website

biolitmap

Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.

biostat_final_exam

biostat final exam data and code

biostats_homework_summary

biostats_homework_summary(SIBS,CAS,2019)

bt2100

BT2100 - Computational Biotechnology

cameo

cameo - computer aided metabolic engineering & optimization

colab

learning Colab

conplex

Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.

crem

CReM: chemically reasonable mutations framework

cyanofactorykb

CyanoFactoryKB is the warehouse system of the CyanoFactory project. Notable is WeDesign, the metabolic modelling feature.

deepclustering

Methods and Implements of Deep Clustering

deepdtaf

a deep learning architecture for protein-ligand binding affinity prediction

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

dlkcat

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

enz-pred

enzyme-datasets

Enzyme datasets used to benchmark enzyme-substrate promiscuity models

escher

Build, share, and embed visualizations of metabolic pathways.

escher-demo

Demos to get started with Escher development

finder

FINDER - FInding key players in complex Networks through DEep Reinforcement learning (Nature Machine Intelligence)

fsl-mate

FSL-Mate: A collection of resources for few-shot learning (FSL).

fusiondta

geneknockout

gln

Implementation of Retrosynthesis Prediction with Conditional Graph Logic Network

gvp-msa