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a-review-of-plms-and-methods-for-protein-structure-prediction

align_plot

a programe to plot icSHAPE score of mutiple aligned species...

alphafold-stepbystep

Run AlphaFold2 (and multimer) step by step

cryodrgn

Neural networks for cryo-EM reconstruction

cuda-uvm-gpt2

PyTorch-UVM on super-large language models.

deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

dna-and-protein-alignment-tool

e2efold

pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

file

操作系统第二次作业

galaxy

Ubuntu服务器上的galaxy配置

gap

GFF Annotation Paser (GAP) is a tool for parsing Gencode/Ensembl GTF and NCBI GFF3 genome annotation files.

gps_pup_matrixmutation

GPS_PUP中的矩阵突变

gps_pupylation

GPS系列算法之Pupylation预测

icshape-pipe

Pipeline to calculate icSHAPE score in genome with sliding window strategy

icshape_protocol

icSHAPE Protocol

ipyrssa

Integrative Python library for RNA Secondary Structure Analysis

kernel2.6

linux内核2.6

lineagebuilder

llama-int8

Quantized inference code for LLaMA models

moses

Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models

notes

os

操作系统第一次家庭作业

paris

This is a python/c++ version PARIS pipeline

parsegtf

A Qt Project to Parse GTF and Genome Files

practical_rl

A course in reinforcement learning in the wild

rip-icshape-map

icSHAPE-MaP analysis

rna_covariation

A tutorial about RNA covary base pairs calling

rna_structure_dynamics

rosettafold2na

RoseTTAFold2 protein/nucleic acid complex prediction

samwidget

A Qt Project to Process Sam File