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apex

cepskat

CEPSKAT extends the SKAT framework to the setting of continuous extreme phenotype samples.

covid-data-cleaning

covid-health-disparities

covid19-rt

covid19-viz

Visualization of COVID-19 spread metrics.

coxkm

R package for conducting SNP-set association tests for right-censored survival outcomes based on a kernel machine cox regression framework.

ghc

R package for Generalized Higher Criticism

gmmat

R package for GMMAT (Generalized Linear Mixed Model Association Test)

gmmat_lite

A light version of GMMAT which does not depend on the C++ library boost

iskat-gesat

GESAT/iSKAT tests for ZxE (gene-environment interactions), after accounting for main effects of Z (gene), main effects of E (environment) and X (covariates).

mermaid

Multilevel Epidemic Regression Model to Account for Incomplete Data

metaskat

MetaSKAT is a R package for multiple marker meta-analysis across studies.

skat

Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.