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Name: Lifan Chen
Type: User
Location: shanghai, China
Name: Lifan Chen
Type: User
Location: shanghai, China
Predict multiple protein conformations using sequence clustering and AlphaFold2.
Open source code for AlphaFold.
Antibody-specific masked language model
A generative model for programmable protein design
Application to assign secondary structure to proteins
repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
Foldseek enables fast and sensitive comparisons of large structure sets.
GEOM: Energy-annotated molecular conformations
Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
An end-to-end machine learning library to directly optimize AUC (AUROC, AUPRC)
lookahead optimizer (Lookahead Optimizer: k steps forward, 1 step back) for pytorch
Listing of papers about machine learning for proteins.
Masif seed paper repository
An implementation of 1D, 2D, and 3D positional encoding in Pytorch and TensorFlow
NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
Compute generation probabilities of CDR3 amino acid and nucleotide sequences
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
An implementation of Performer, a linear attention-based transformer, in Pytorch
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
Plausibility checks for generated molecule poses.
Geometric Deep Learning Extension Library for PyTorch
On The Variance Of The Adaptive Learning Rate And Beyond
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.