Comments (2)
Do you have updates on this Maddy?
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I am planning to resubmit it this month.
from vistoseg.
Related Issues (18)
- Explain Visium and/or the data used in this documentation
- image requirements HOT 1
- fine tuning segmentation step HOT 4
- update refineVNS() to provide csv with shape and size metrics HOT 1
- create thresholding function based on refineVNS() metric.csv output
- update countSpots() function to count nuclei/spot based on centroid of nuclei HOT 1
- Getting cropped spot images HOT 1
- Update citation information HOT 1
- Clarify the docs due to differences between Visium and Visium SPG processing pipeline steps HOT 2
- Explain how to download the data used in this documentation HOT 2
- Citation information and software name
- Add software requirements
- Avoid full paths
- Be more verbose and describe code chunks HOT 1
- Write a short paper about your software
- OSTA vs the documentation in this repo
- bookdown info
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