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arb2016fall

course project on image classification

basic_cmd

bloggercmd

Blogger from command line

brainxcan

brainxcan-docs

cnn_graph

Convolutional Neural Networks on Graphs with Fast Localized Spectral Filtering

covid19-wicd-genetics

What I can do with covid-19 genetics?

cowplot

cowplot: Streamlined Plot Theme and Plot Annotations for 'ggplot2'

danq

A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences

deep_m6a

This project works on m6a mark.

deep_variant

Explore functional effect of non-coding variant using deep learning

deep_variant_annotation

This is a light and easy-to-use version of deep_variant for annotate a list of variant using model trained by deep_variant

distance_to_nearest_region

This repository takes one variant file (in bed format) and one region file (in bed format) and outputs the distance of each variant to nearest region

ebnm

R package to fit Empirical Bayes Normal Means model.

encode_ccre_extractor

explore-eqtl

The repository for rotation project at Matthew's lab. See results at

extract_intron_from_gff3

The repository contains scripts to extract intron from gff3

fasterscale

Tutorial for making my first R package by Peter.

fb-caffe-exts

Some handy utility libraries and tools for the Caffe deep learning framework.

finemapaim

fiveminutestats

A repo of short "vignettes" illustrating statistical concepts

flashr

R package for Empirical Bayes Factor Analysis.

footprint_annotation

See results here

galaxy-falcon

Feedback Adaptive Loop for Content-Based Retrieval (FALCON) algorithm on Galaxy.

gcta

GCTA software

gene-graph-conv

Towards Gene Expression Convolutions using Gene Interaction Graphs

genomewide_annotation

Given a bed file, annotate each position of the given regions in allele-specific manner (but not strand-specific) and generate TSV file. For further usage, it also provides scripts to convert TSV to BED by applying some customized filtering rules.

ggmix

ggsb-jc-2019

This repository is for presenting in GGSB journal club in 2019 @ UChicago

google-api-python-client