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behrt

Code for BEHRT: Transformer for Electronic Health Records

covid-npi

covid19_media

examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

gat-etm

"Modeling electronic health record data using an end-to-end knowledge-graph-informed topic model" paper on Sci Rep (2022)

getm

gsr

gtm-decon

hart-heart-failure-attentive-risk-trajectory

heterogeneous_ehr

igem

mixehr

mixehr-guided

mixehr-seed

Public code for KDD 2022 paper Automatic Phenotyping by a Seed-guided Topic Model

mixehr-surg

Code for MixEHR-SurG: a joint proportional hazard and guided topic model for inferring mortality-associated topics from electronic health records

mixehr_seed_tutorial

This tutorial is provided for the UK Biobank Data Training Workshop, Tokyo, Japan

mixehrs

recurrent-disease-progression-networks

scetm-1

A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.

singlecell-deepfeature

Single Cell Generative Adversarial Network (scGAN)

tsfpaper

This repository contains a reading list of papers on Time Series Forecasting/Prediction (TSF) and Spatio-Temporal Forecasting/Prediction (STF). These papers are mainly categorized according to the type of model.

vgraph

Code for NeurIPS paper "vGraph: A Generative Model for Joint CommunityDetection and Node Representation Learning"