FDR Description in Arg parse is potentially wrong about alphalink

[smturzo]

Thank you!! Appreciate it.

[lhatsk]

Sorry, it is indeed wrong, thanks for letting me know! I updated the text to clarify.

The FDR is the false discovery rate, a confidence estimate (see e.g., https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944926/). There are dataset-level FDRs and link-level FDRs. The argument corresponds to the dataset-level FDR and is only used if the link-level FDR (last column in the CSV) is not given. The link-level FDR is then a confidence estimate that this particular crosslink, say (i=10,j=40) is correct. FDR of 5% would mean here that we expect 5% noise in the data set.

[lhatsk]

Let me know how it's working out for you. Curious to hear about more real-world usage. :-)