Related Issues (20)
- Did bwa index use the SA-IS algorithm?
- Fail to read header from fasta input
- When i use bwa for mapping with grch37.p13.fa and hg19.fa,there exists some differences in some regions.
- Build fails with LTO
- [M::bwa_idx_load_from_disk] read 0 ALT contigs
- Indexing large genome failed HOT 3
- no ID within the read group line
- Could anyone tell me the exact meaning of '-5SP'?
- missing `bwa-0.7.18.tar.bz2` for 0.7.18 release HOT 1
- Is there MD tag in output of bwa?
- Set min insert size with -I option. Why do I still get proper pairs with insert size < min insert size?
- bwa alignment of Nanopro sequences to call the transposable elements (TEs)
- How are ambiguity charaters handled in BWA?
- BWA and short read mapping
- Continuation after error "paired reads have different names" HOT 1
- How can i obtain all the regions reads hit. (in duplication region) HOT 2
- unexpected high quality scores with chimeric SA alternatives reported HOT 3
- feature proposal: allow tag name to be specified for storing fastq comment for read HOT 1
- Cannot allocate memory
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from bwa.