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colombia_dzc_satscan_velocity

This repository includes the codes and data used in the study: "Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia", by Laís Picinini Freitas, Mabel Carabali, Mengru Yuan, Gloria I. Jaramillo-Ramirez, Cesar Garcia Balaguera, Berta N. Restrepo, and Kate Zinszer.

icar_chikungunya

This repository includes the codes used for the study: "Spatio-temporal modelling of the first Chikungunya epidemic in an intra-urban setting: the role of socioeconomic status, environment and temperature", by Laís P Freitas, Alexandra Schmidt, William Cossich, Oswaldo G. Cruz and Marilia S. Carvalho.

joint_dzc_model

This repository contains codes used for the manuscript "Simultaneous Aedes-borne diseases outbreaks: a joint model for the total cases and disease-specific probability of dengue, Zika, and chikungunya", by Alexandra M. Schmidt, Laís Picinini Freitas, Oswaldo. G. Cruz and Marilia Sá Carvalho.

laispfreitas.github.io

pe_satscan

This repository includes the codes and data used for the study: "Identifying hidden Zika hotspots in Pernambuco, Brazil: A spatial analysis", by: Laís P Freitas, Rachel Lowe, Andrew E Koepp, Sandra A Valongueiro, Molly Dondero, Leticia J Marteleto.

satscan_dzc

R script used for the paper "Space-time dynamics of a triple epidemic: dengue, chikungunya and Zika clusters in the city of Rio de Janeiro", by Laís P. Freitas, Oswaldo G. Cruz, Rachel Lowe and Marilia S. Carvalho.

zs_cmsp_code

Code for paper "Zero-state coupled Markov switching count model for spatio-temporal infectious disease spread" by Dirk Douwes-Schultz and Alexandra M. Schmidt.