labode Goto Github PK
Name: Jonas Labode
Type: User
Company: Hannover Medical School
Jonas Labode's Projects
csv_merger_py
Tool to merge multiple .csv files containing biological measurements
euler_number_py
Calculates the euler number (Euler-Poincaré characteristic) for a .dot graph. Aimed at the analysis of capillary networks.
genana_man
genana_py
label_image_py
label_map_py
mean_image_value
Calculates the mean value of all non zero voxels in a .mha file
nrrd_translator_py
raw2nrrd_py
Tool to convert 8bit .raw image files to .nrrd files for further processing. Includes a binarizing option to convert every voxel value != 0 to 1 to create a image with consistent labeling of the non-background voxels.
sgext
Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them completely in-silico. Used at least in biopolymers simulations and vascular networks.
surs_generator_py
Software implementation of the systematic uniform random sampling process
volume_py
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