cant compile paperdoll about js-segment-annotator

[kyamagu]

@hosna I don't an extensive support plan for a proof-of-concept project like paperdoll and that's why I don't have it on github. Nevertheless, the error seems to be a C++ runtime issue. What exactly is the compile error you get? You will need to successfully compile the code in the current platform.

[hosnasattar]

Error using mex
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:31:23: warning: ‘GCO_CLOCKS_PER_SEC’ initialized and declared ‘extern’
extern "C" gcoclock_t GCO_CLOCKS_PER_SEC = CLOCKS_PER_SEC;

                   ^

In file included from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:109:0,
from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h: In instantiation of ‘int Energy<captype, tcaptype,
flowtype>::get_var(Energy<captype, tcaptype, flowtype>::Var) [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::Var
= int]’:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:197:20: required from here
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:328:91: error: ‘what_segment’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
inline int Energy<captype,tcaptype,flowtype>::get_var(Var x) { return (int) what_segment(x); }

                                                                                       ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:328:91: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:328:91: note: use ‘this->what_segment’ instead
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h: In instantiation of ‘void Energy<captype, tcaptype,
flowtype>::add_term1(Energy<captype, tcaptype, flowtype>::Var, Energy<captype, tcaptype, flowtype>::Value, Energy<captype, tcaptype, flowtype>::Value) [with captype
= int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::Var = int; Energy<captype, tcaptype, flowtype>::Value = int]’:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:280:22: required from here
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:207:22: error: ‘add_tweights’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(x, B, A);

                  ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:207:22: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:207:22: note: use ‘this->add_tweights’ instead
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h: In instantiation of ‘void Energy<captype, tcaptype,
flowtype>::add_term2(Energy<captype, tcaptype, flowtype>::Var, Energy<captype, tcaptype, flowtype>::Var, Energy<captype, tcaptype, flowtype>::Value, Energy<captype,
tcaptype, flowtype>::Value, Energy<captype, tcaptype, flowtype>::Value, Energy<captype, tcaptype, flowtype>::Value) [with captype = int; tcaptype = int; flowtype =
long long int; Energy<captype, tcaptype, flowtype>::Var = int; Energy<captype, tcaptype, flowtype>::Value = int]’:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:304:42: required from here
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:220:22: error: ‘add_tweights’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(x, D, A);

                  ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:220:22: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:220:22: note: use ‘this->add_tweights’ instead
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:235:23: error: ‘add_tweights’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(x, 0, B); /* first term */

                   ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:235:23: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:235:23: note: use ‘this->add_tweights’ instead
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:236:24: error: ‘add_tweights’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(y, 0, -B); /* second term */

                    ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:236:24: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:236:24: note: use ‘this->add_tweights’ instead
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:237:24: error: ‘add_edge’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_edge(x, y, 0, B+C); /* third term */

                    ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:237:24: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:237:24: note: use ‘this->add_edge’ instead
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:245:24: error: ‘add_tweights’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(x, 0, -C); /* first term */

                    ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:245:24: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:245:24: note: use ‘this->add_tweights’ instead
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:246:23: error: ‘add_tweights’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_tweights(y, 0, C); /* second term */

                   ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:246:23: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:246:23: note: use ‘this->add_tweights’ instead
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:247:24: error: ‘add_edge’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_edge(x, y, B+C, 0); /* third term */

                    ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:247:24: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:247:24: note: use ‘this->add_edge’ instead
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:251:22: error: ‘add_edge’ was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation [-fpermissive]
add_edge(x, y, B, C);

                  ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:251:22: note: declarations in dependent base ‘Graph<int, int, long long int>’ are
not found by unqualified lookup
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:251:22: note: use ‘this->add_edge’ instead
In file included from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:110:0,
from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/graph.cpp: In instantiation of ‘Graph<captype, tcaptype, flowtype>::Graph(int, int, void
()(char)) [with captype = int; tcaptype = int; flowtype = long long int]’:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:187:189: required from ‘Energy<captype, tcaptype, flowtype>::Energy(int, int,
void ()(char)) [with captype = int; tcaptype = int; flowtype = long long int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1230:33: required from here
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/graph.cpp:21:83: warning: deprecated conversion from string constant to ‘char_’
[-Wwrite-strings]
if (!nodes || !arcs) { if (error_function) (_error_function)("Not enough memory!"); exit(1); }

                                                                               ^

In file included from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:111:0,
from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp: In instantiation of ‘flowtype Graph<captype, tcaptype,
flowtype>::maxflow(bool, Block) [with captype = int; tcaptype = int; flowtype = long long int]’:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:325:33: required from ‘Energy<captype, tcaptype, flowtype>::TotalValue
Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long
long int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1237:37: required from here
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:484:145: warning: deprecated conversion from string constant to ‘char’
[-Wwrite-strings]
if (maxflow_iteration == 0 && reuse_trees) { if (error_function) (*error_function)("reuse_trees cannot be used in the first call to maxflow()!"); exit(1); }

                                                                                                                                             ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:485:126: warning: deprecated conversion from string constant to ‘char_’
[-Wwrite-strings]
if (changed_list && !reuse_trees) { if (error_function) (_error_function)("changed_list cannot be used without reuse_trees!"); exit(1); }

                                                                                                                          ^

In file included from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:110:0,
from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/graph.cpp: In instantiation of ‘void Graph<captype, tcaptype,
flowtype>::reallocate_nodes(int) [with captype = int; tcaptype = int; flowtype = long long int]’:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/graph.h:364:54: required from ‘Graph<captype, tcaptype, flowtype>::node_id Graph<captype,
tcaptype, flowtype>::add_node(int) [with captype = int; tcaptype = int; flowtype = long long int; Graph<captype, tcaptype, flowtype>::node_id = int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:198:30: required from ‘Energy<captype, tcaptype, flowtype>::Var Energy<captype,
tcaptype, flowtype>::add_variable(int) [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::Var = int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1140:31: required from here
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/graph.cpp:70:74: warning: deprecated conversion from string constant to ‘char_’
[-Wwrite-strings]
if (!nodes) { if (error_function) (_error_function)("Not enough memory!"); exit(1); }

                                                                      ^

In file included from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/graph.h:43:0,
from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:77,
from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.h:109,
from /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:4:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/block.h: In instantiation of ‘Type* Block::New(int) [with Type = int]’:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:110:36: required from ‘void Graph<captype, tcaptype,
flowtype>::add_to_changed_list(Graph<captype, tcaptype, flowtype>::node_) [with captype = int; tcaptype = int; flowtype = long long int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:520:27: required from ‘flowtype Graph<captype, tcaptype,
flowtype>::maxflow(bool, Block) [with captype = int; tcaptype = int; flowtype = long long int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:325:33: required from ‘Energy<captype, tcaptype, flowtype>::TotalValue
Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long
long int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1237:37: required from here
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/block.h:124:76: warning: deprecated conversion from string constant to ‘char’
[-Wwrite-strings]
if (!next) { if (error_function) (_error_function)("Not enough memory!"); exit(1); }

                                                                        ^

/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/block.h: In instantiation of ‘Type* DBlock::New() [with Type = Graph<int, int, long
long int>::nodeptr]’:
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:95:5: required from ‘void Graph<captype, tcaptype,
flowtype>::set_orphan_rear(Graph<captype, tcaptype, flowtype>::node_) [with captype = int; tcaptype = int; flowtype = long long int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:183:36: required from ‘void Graph<captype, tcaptype,
flowtype>::maxflow_reuse_trees_init() [with captype = int; tcaptype = int; flowtype = long long int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/maxflow.cpp:487:44: required from ‘flowtype Graph<captype, tcaptype,
flowtype>::maxflow(bool, Block) [with captype = int; tcaptype = int; flowtype = long long int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/energy.h:325:33: required from ‘Energy<captype, tcaptype, flowtype>::TotalValue
Energy<captype, tcaptype, flowtype>::minimize() [with captype = int; tcaptype = int; flowtype = long long int; Energy<captype, tcaptype, flowtype>::TotalValue = long
long int]’
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/GCoptimization.cpp:1237:37: required from here
/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/src/block.h:223:76: warning: deprecated conversion from string constant to ‘char’
[-Wwrite-strings]
if (!first) { if (error_function) (_error_function)("Not enough memory!"); exit(1); }

                                                                        ^

Error in GCO_BuildLib (line 67)
eval(mexcmd); % compile and link in one step

Error in make (line 14)
GCO_BuildLib;

[kyamagu]

@hosna Can you check this fix?

[hosnasattar]

I already try it but the patch file is not working. I also download the package somewhere else but still I have same problem to build it.

[kyamagu]

@hosna Did you really apply the patch? What error did you get when applying a patch?

[hosnasattar]

sattar@ganymede:/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0$ patch -p1 < gco-patch.txt
can't find file to patch at input line 5
Perhaps you used the wrong -p or --strip option?

The text leading up to this was:

|diff --git a/lib/gco-v3.0/GCO_BuildLib.m b/lib/gco-v3.0/GCO_BuildLib.m
|index 7c37571..6eef5c5 100755
|--- a/lib/gco-v3.0/GCO_BuildLib.m

|+++ b/lib/gco-v3.0/GCO_BuildLib.m

File to patch: GCO_BuildLib.m
patching file GCO_BuildLib.m
can't find file to patch at input line 27
Perhaps you used the wrong -p or --strip option?

The text leading up to this was:

|diff --git a/lib/gco-v3.0/src/energy.h b/lib/gco-v3.0/src/energy.h
|index 0d1499b..278c3c8 100755
|--- a/lib/gco-v3.0/src/energy.h

|+++ b/lib/gco-v3.0/src/energy.h

[kyamagu]

@hosna Seems you are placing the patch file at a wrong location...

[hosnasattar]

its in the folder I was in!

[hosnasattar]

sattar@wks-12-22:~$ cd /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0/
sattar@wks-12-22:/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0$ ls
GCMex GCO_Create.m GCO_GetLabeling.m gco-patch.txt.rej GCO_SetLabeling.m GCO_SetVerbosity.m gco-v3.0-master.zip README.TXT
gcmex-2.3.0.zip GCO_Delete.m GCO_ListHandles.m GCO_README.TXT GCO_SetLabelOrder.m GCO_Swap.m MRF-master src
GCO_BuildLib.m GCO_ExpandOnAlpha.m gco-patch.txt GCO_SetDataCost.m GCO_SetNeighbors.m GCO_UnitTest.m MRF-master.zip
GCO_ComputeEnergy.m GCO_Expansion.m gco-patch.txt.orig GCO_SetLabelCost.m GCO_SetSmoothCost.m gco-v3.0-master private
sattar@wks-12-22:/BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/lib/gco-v3.0$ patch -p1 < gco-patch.txt
can't find file to patch at input line 5
Perhaps you used the wrong -p or --strip option?

The text leading up to this was:

|diff --git a/lib/gco-v3.0/GCO_BuildLib.m b/lib/gco-v3.0/GCO_BuildLib.m
|index 7c37571..6eef5c5 100755
|--- a/lib/gco-v3.0/GCO_BuildLib.m

|+++ b/lib/gco-v3.0/GCO_BuildLib.m

File to patch:

[kyamagu]

@hosna according to your output,

cd /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/
mv lib/gco-v3.0/gco-patch.txt .
cd /BS/wild-search-gaze/work/paperdoll-v1.0/paperdoll-v1.0/
patch -p1 < gco-patch.txt

[hosnasattar]

thanks. it works.