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Name: Kristian Ullrich
Type: User
Company: Max Planck Institute for Evolutionary Biology
Location: Ploen
Name: Kristian Ullrich
Type: User
Company: Max Planck Institute for Evolutionary Biology
Location: Ploen
Program for analysing NGS data.
IUPAC FASTA extraction from BAM files to stdout
collection of scripts for bioinformatic analysis
Conda recipes for the bioconda channel.
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R. More information at
Making Protein folding accessible to all!
[CRBHits](https://github.com/kullrich/CRBHits) is a reimplementation of the Conditional Reciprocal Best Hit algorithm [crb-blast](https://github.com/cboursnell/crb-blast) in R.
Fork of the DAGchainer project https://sourceforge.net/projects/dagchainer
Use stdin distance matrix to calculate bionjs
distSTRING calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
Slide presentation and material for the software demo "Downstream Analysis of Synteny Networks with MSA2dist"
This is a shiny app built around clusterProfiler to perform functional enrichment analysis from RNA-Seq DE analysis
Pipeline for the identification of (coding) gene structures in draft genomes.
Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2
kortho calculates pairwise kmer jaccard distance between two peptide fasta files
korthoCPP calculates pairwise kmer jaccard distance between two peptide fasta files
korthoR calculates pairwise kmer jaccard distance between all sequences of an AAStringSet
Personal website
Convert a FASTA alignment with ambiguous nucleotides to literal distance matrix
Simple pileup-based variant caller
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
Evolutionary Transcriptomics with R
oggmap is a python package to extract orthologous maps (short: orthomap or in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Oggmap results (gene ages per orthologous group) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
Phylogenetic orthology inference for comparative genomics
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.