Kieran Samuk's Projects
candy survey data
A conda-smithy repository for conda-forge-pinning.
A demo of the capabilities of the R libraries dplyr and magrittr
Design and analysis of a reduced genomic representation dataset
Tools for analyzing the relationship between recombination rate and divergence.
Precursor to the "gene_flow_linkage" repo
Personal library of scripts for processing genomic data
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
Swiss/North America team exploring inversion constraints
The Samuk Lab Website
Jekyll theme based on Freelancer bootstrap theme
Code and data for a scientific manuscript focused on assessing the effect of gene flow on LD-based estimates of recombination rate
Software for painlessly estimating average nucleotide diversity within and between populations
A conda-smithy repository for pixy.
Analysis scripts used in the academic manuscript accompanying the pixy software
Data Carpentry R lessons on ecology
Introduction to R for non-programmers using gapminder data.
Convenience scripts for preparing vcf files for input into rehh
Code and data associated with Samuk et al. 2020 (Current Biology)
Code and data for Samuk et al. (2020)
Analysis of sex-linked genetic markers generated by STACKS
An analysis of brain size in experimental populations of threespine stickleback
Pipeline for structural variant identification
R package for the reproducible detection of synteny blocks using genetic map data
An optimistic vision of population genetics in the tidyverse