Name: Krish Bharat
Type: User
Company: @mention https://github.com/ucsf
Bio: I am a recent graduate working at the Department of Neurology at UCSF. I am working on expanding a medical knowledge network known as SPOKE.
Location: San Francisco, CA
Blog: https://www.github.com/krishbharat96
Krish Bharat's Projects
Tool for automatically mapping IDs from prominent medical databases such as ICD10, MESH, MEDDRA etc. to Disease Ontology Identifiers
Library of Integrated Cellular Signatures L1000
Creation of Metbolomic hetnets for integration into SPOKE Medical Knowledge Network
OBO-formatted ontologies → networkx (Python 3)
Module for directly obtaining and querying data from PostgreSQL dump (.sql) files
Creates a protein pdb, reads the pdb file and looks for relevant phi-psi angles
SEA Data within SPOKE
Integration of various Chemical and Biological Databases into the SPOKE (formerly known as Hetio) database.
Augment Neo4j Browser with Zoom, DataTable and Charts
Module for easily parsing data from UniProt dat files (uniprot parser)