kpwhri Goto Github PK

.github

Organizational landing page.

acs5yeartovdw

Extract ACS data via API, Load to Teradata, Transform within Teradata

act_eye_extractor

anaphylaxis-runrex

Using runrex for certain anaphylaxis-related variables

apanc-runrex

Feature extraction for developing an algorithm to identify acute pancreatitis cases.

apex_iud_nlp

bratdb

Extract brat-formatted data to prepare the annotated data for various NLP applications

censusspatialjoinsas

Pulls in Census Shapefiles and performs a spatial join. Helpful for taking geocoded data and applying different map vintages.

charlsonmacro

SAS code to calculate the Deyo version of the Charlson comorbidity score

claritynlp

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

corporutil

Utilities functions for getting statistics, etc. on a corpus.

crn-lung-nodule

Extract lung nodules and sizes from radiology data

dqt_api

dqt_ng

example_projects

Example GitHub projects to provide guidance on setting up project documentation on GitHub site.

fe5_konsepy

Implementing FE5 variables in konsepy framework

gemss

Getting folks to think about smoking cessation

hcsrn-vdw-to-ohdsi-omop

This project translates data from an HCSRN-VDW into an OHDSI-OMOP common data model using SAS.

hcsrncensusdemogdec

heartsteps

Heart Steps 2.0 Application

konsepy

Framework for build NLP information extraction systems using regular expressions.

konsepy_nlp_template

Template for using konsepy for building NLP algorithms with regular expressions.

kpwhri.github.io

Backend for kpwhri.github.io pages.

maltreatment_nlp

medical_history

Automatic extraction of personal and family history given any condition

mhnav_pipeline

This NLP pipeline will use the output of `bratdb` to extract the features used in the MH Navigator model.

mml_utils

Create and run batches of metamaplite jobs

ndi_formatter

Format data for National Death Index (NDI) requests.

pcos-runrex

pmca

Dr. Rita Mangione Smith et al.'s Pediatric Medical Complexity Algorithm