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Kyle Puhger's Projects

allensdk icon allensdk

code for reading and processing Allen Institute for Brain Science data

bootstrap_ci icon bootstrap_ci

Compute bootstrapped confidence intervals for event-related transients.

fiberphotopy icon fiberphotopy

Package for loading and processing fiber photometry data

neuromorphopy icon neuromorphopy

Lightweight python package for downloading neuron morphologies from the NeuroMorpho archives.

rivuletpy icon rivuletpy

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

ssl_neuron icon ssl_neuron

Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"

uv-cookie icon uv-cookie

Cookiecutter template for python using `uv`

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