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ampcorrect

Software for correcting and collapsing long read sequenced amplicons

bam_to_mods

bioconda-recipes

Conda recipes for the bioconda channel.

biopython

Official git repository for Biopython (originally converted from CVS)

bioservices

bubblebabblepy

Bubble babble encoding library in python

bubblepy

Python Bubble Babble library

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

counterr

cuddlysv

Long read based human genomic structural variation detection with cuteSV

dasobert

Dasobert is a Java DAS client library. It is based on BioJava. Currently it supports the DAS/1 spec and there are some bits in there that will provide support for DAS/2 as well.

eel

Enhancer Element Locator

finfamily

A general purpose genealogy software

gcf52ref

GpC methylation from fast5:s to reference anchored calls

hla-prg-la

Fast HLA type inference from whole-genome data

huddinge_tsne_browser

Tool to browse sequence kmers laid out in 2D with TSNE approximating Huddinge distance

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

ldi-pcr-call

Software for calling insertions from long read sequenced LDI-PCR reads

learn_rust

longshot

diploid SNV caller for error-prone reads

matplotlib

matplotlib: plotting with Python

moder

MODER is a program to learn DNA binding motifs from SELEX datasets.

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

multiqc_testdata

Test data for MultiQC. See https://github.com/ewels/MultiQC

nanoget

Functions to extract information from Oxford Nanopore sequencing data and alignments

nanoplot

Plotting scripts for long read sequencing data

nanopolish

Signal-level algorithms for MinION data

ont2cram

Oxford Nanopore HDF/Fast5 to CRAM conversion tool

ont_fast5_api

Oxford Nanopore Technologies fast5 API software

ont_hg_somatic

Somatic variant calling for ONT WGS cancer data