Name: Komal Rathi
Type: User
Company: Children's Hospital of Philadelphia
Bio: Bioinformatics Scientist III | D3b center | Children's Hospital of Philadelphia
Twitter: komalsrathi
Location: Philadelphia, PA
Blog: https://scholar.google.com/citations?user=hreia8QAAAAJ&hl=en
Komal Rathi's Projects
Infer if a SNP regulates or affects binding of a TF by altering its motif
Allele Specific Expression using bam-readcount
My bash profile
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Battenberg algorithm and associated implementation script
Leukgen environment variables.
Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
Interconvert between various common genomic data file formats
R Shiny: Genelists Intersection Tool (GIST)
guide/solutions to general problems around git
R shiny: Data tracker for GMKF projects
Run GSNAP in parallel mode
Prepare GTEx data
HiC analysis to infer inter- and intra-chromosomal interactions
make small test bam files (~2.0GB) to simulate WGS data
A brief web page about me
Intranet website for Leukemia Genomics sample and project management.
General linux based hacks
Portal for John Maris's Lab
Code for MendelianRNA-seq processing
All post processing analysis related to CdLS mendelian analysis project
Analysis of Microarray data
miRNA Enrichment in microarray dataset
Measuring short motif conservation using PhastCons scores
Motif Search using Meme Suite