kmhernan Goto Github PK
Name: Kyle Hernandez
Type: User
Company: Belay Diagnostics
Bio: Director of Bioinformatics
Twitter: evilution84
Location: Chicago, IL
Blog: kmhernan.github.io
Name: Kyle Hernandez
Type: User
Company: Belay Diagnostics
Bio: Director of Bioinformatics
Twitter: evilution84
Location: Chicago, IL
Blog: kmhernan.github.io
Curated list of bioinformatics formats and publications
C++ API & command-line toolkit for working with BAM data
Battenberg R package for subclonal copynumber estimation
Source for workshop documents
Creates simple graphviz plots from CWL workflows
Common Workflow Language reference implementation
Drop casava vendor failed fastq reads
Python-based framework for computational immunomics
Funnel is a toolkit for distributed task execution via a simple, standard API.
CLI for splitting a fastq that has multiple readgroups
Lectures on Genome Wide Association Studies (GWAS) using Python, Limix and Jupyter Noteboos
Some helpers for dealing with dbgap xmls
My bio and homepage
The Gen3 Workflow Execution Service
A repo for code specifically tailored to the merger of the TCGA PanCan VCF (per-caller) files into a MAF file. This repository borrows from code available in other repositories and has some custom code to handle the merger. The project's main purpose is simply to do the merge for this one project and therefore has no features to make it more generic or maintainable beyond this goal.
Repository for scripts associated with a publication
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Python Interface to Slurm
The "Python Machine Learning" book code repository and info resource
Updated version of the RNA-SeQC software
NGS tools written in the Scala language
Using the TACC launcher to run bioinformatic pipelines
Tools for counting 3' tag seq data
Testing yevis functionality
Web application for browsing Yevis workflow registry
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.