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adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

bioinformatics_learning

Bioinformatics learning (for high performance computing, big data, and machine learning)

blobstore

A simple reference implementation of immutable data store

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

cockroach

A Scalable, Geo-Replicated, Transactional Datastore

collection-benchmark

Benchmark for sorted slice v.s. llrb v.s. btree

csp-cost-analysis

CSP Cost Analysis

deep-learning

Repo for the Deep Learning Nanodegree Foundations program.

deep_learning1

First Neural Network

deep_learning2

Image Classification

deep_learning3

deep_learning4

deep_learning5

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

etcd

A distributed consistent key-value store for shared configuration and service discovery

gatk

GATK4 development

genseq

Exercise for genome sequencing

grpc

The C based gRPC (C++, Node.js, Python, Ruby, Objective-C, PHP, C#)

grpc-java

The Java gRPC implementation. HTTP/2 based RPC

hail

Scalable genomic data analysis.

kochiku

Shard your builds for fun and profit

kops

Kubernetes Operations (kops) - Production Grade K8s Installation, Upgrades, and Management

kube-arbitrator

Policy based resource sharing for Kubernetes cluster

kubernetes

Production-Grade Container Scheduling and Management

kubernetes-ec2-autoscaler

A batch-optimized scaling manager for Kubernetes

llm-starter-pack

🤖 Get started with LLMs on your kind cluster, today!

minikube

Run Kubernetes locally

mixer

Istio's Mixer and its adapters

opencpb

Open Computing Platform for Bioinformatics

p2

Platypus Platform: Tools for Scalable Deployment