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License: MIT License

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trans-omics-acceleration-library's Introduction

Trans-Omics Acceleration Library

Introduction

The Trans-Omics Acceleration Library (TAL) contains key modules for Trans-Omics analysis that are optimized for Xeon.

The contributors to TAL are Sanchit Misra, Vasimuddin Md, Saurabh Kalikar, Narendra Chaudhary and Kanak Mahadik.

Getting Started

git clone --recursive <REPO URL>
make

Publications

Vasimuddin Md, Sanchit Misra, Heng Li, Srinivas Aluru. Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems. IEEE Parallel and Distributed Processing Symposium (IPDPS), 2019.

Sanchit Misra, Tony Pan, Kanak Mahadik, George Powley, Priya N Vaidya, Md Vasimuddin, Srinivas Aluru. Performance extraction and suitability analysis of multi- and many-core architectures for next generation sequencing secondary analysis. International Conference on Parallel Architectures and Compilation Techniques (PACT), 2018.

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