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.tmux

🇫🇷 Oh my tmux! My self-contained, pretty & versatile tmux configuration made with ❤️

amethyst

Automatic tiling window manager for macOS à la xmonad.

annotsv

Annotation and Ranking of Structural Variation

astral

Python calculations for the position of the sun and moon.

balsamic

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

battenberg

Battenberg R package for subclonal copynumber estimation

blacklist

Application for making ENCODE Blacklists

breakdancer

SV detection from paired end reads mapping

cgpbattenberg

Battenberg algorithm and associated implementation script

cnv-seq

cnv-seq with custom bugfix

cnvpytor

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

cyvcf2

cython + htslib == fast VCF and BCF processing

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

dotfiles

dotfiles-1

A collection of my personal dotfiles

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

figlet

Claudio's FIGlet tree

freec

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

genome-spy

A GPU-accelerated toolkit and visualization grammar for genomic (and other) data

gens

lolcat

Rainbows and unicorns!

loqusdb

A simple observation count database

manta

Structural variant and indel caller for mapped sequencing data

modern-unix

A collection of modern/faster/saner alternatives to common unix commands.

mongo

The MongoDB Database

msisensor-pro

Microsatellite Instability (MSI) detection using high-throughput sequencing data.

multisv

A tool to identify Structural Variants in Multiple populations

ohmyzsh

🙃 A delightful community-driven (with 2,000+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

powerline

Powerline is a statusline plugin for vim, and provides statuslines and prompts for several other applications, including zsh, bash, tmux, IPython, Awesome and Qtile.

pyvcf

A Variant Call Format reader for Python.