kevinsayers Goto Github PK
Name: Kevin Sayers
Type: User
Company: AWS
Bio: Bioinformatics, HPC, workflow, and cloud developer
Location: Denver, CO
Kevin Sayers's Projects
adventure_films
agc-custom-images
amazon-genomics-cli
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
aws-batch-genomics
Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.
aws_mvp_hpc
Details about the MVP effort for testing AWS as HPC for a simple RNAseq pipeline.
aws_poc_snakemake
b2safe-b2stage-training
This training module provides you with instructions on how to deploy B2SAFE and B2STAGE. It also shows you how to use these services. Moreover, the module provides hands-on training on Persistent Identifiers, more specifically Handle v8 and the corresponding B2HANDLE python library.
barracuda_singularity
A GPU enabled Singularity image for the BarraCUDA short read aligner
crispr_finder
Python example code to find 23mer CRISPRs
cwl-tes
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
cwl2nxf
Import a CWL workflow specification to Nextflow script (experimental)
cwl_flows
Some common workflow language flows.
cwl_recipes
Various CWL examples I found useful
cwl_rnatoy
Implementing the rnatoy workflow from Nextflow in CWL.
dask_mpi_xgboost
fasta_downloader
Python script to download FASTA files for a given list of UID values.
fasta_molecular_formulas
Takes in a protein FASTA sequence and outputs the molecular formula from it.
federatedpoc
hack17-tutorial
Nextflow basic tutorial for newbie users
hpc
A collection of various resources, examples, and executables for the general NREL HPC user community's benefit.
jekyll-now
Build a Jekyll blog in minutes, without touching the command line.
k8spermissions
kallisto-nf
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
maldi_html
Generate an HTML file from MALDI spectra
master_of_pores
Nextflow pipeline for analysis of Nanopore reads (from RNA/cDNA/DNA)
masters_work
Scripts and projects from MSc in Bioinformatics
mastersthesis
My master's thesis and defense presentation.
mnist_nextflow
Nextflow workflow to run the basic Tensorflow MNIST
multitest
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