kevinvervier Goto Github PK

apg

Accelerated proximal gradient in R

autoresampling

AutoML Solution for Imbalanced Domain Learning [R Package]

brainslinger

Combination of brain-specific variant annotation and transcriptome imputation

brava

spatiotemporal context estimation for genetic variants in the brain development

carbologr

This repository provides a GUI app for phenotype assays analysis from raw data to chemoinformatics.

curatedmetagenomicdatacuration

Curation for curatedMetagenomicData

curriculum

fgsea

Fast Gene Set Enrichment Analysis

gaitanalysis

data processing for Kinect gait records

googleformhtml

ibs

metagenomicsanalysis

Metagenomics analysis scripts/toolkit in R

metagm

Team162 metagenome pipeline

metavw

Source for reproducing results presented in "Large-scale machine learning for metagenomics sequence classification" (Vervier et al., 2016)

ml-tutorial

UIHC machine learning tutorial

mtg-app

orthopen

Learning tasks with orthogonal/disjoint supports

pokedex

introduction to machine learning using Pokemon characteristics

shiny-phyloseq

An interactive web application for demonstrating and using phyloseq.

slinger

Large-scale Machine Learning for gene expression prediction based on genotype only

structured_ml_for_microbial_identification

Source for reproducing results presented in 'Benchmark of structured machine learning methods for microbial identification from mass-spectrometry data' (Vervier et al., 2015)

taxassignmash

wrapper script combining Mash and GTDB databases

test

tisan

Tissue-specific variant annotation