kevin-wamae Goto Github PK
Name: Kevin Wamae
Type: User
Company: KEMRI-Wellcome Trust Research Programme
Twitter: kevinkariuki
Location: Kilifi, Kenya
Name: Kevin Wamae
Type: User
Company: KEMRI-Wellcome Trust Research Programme
Twitter: kevinkariuki
Location: Kilifi, Kenya
An R script for generating allele frequencies from DNA/amino acid sequence alignments.
a bbmap bash script for demultiplexing fastq files based on indexes provided
An R pipeline for generating haplotype frequencies from amino acid sequence alignments
Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with Guppy).
IDEEL pipelines for next-generation sequence quality control and analysis
A bash script for downloading sequence datasets from PlasmoDb, a Plasmodium informatics resource
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC
A Snakemake workflow for variant calling using GATK4 best practices
Variant Calling Pipeline Using GATK4 and Nextflow
Population Genetic Analysis Gadget for Haploid Organisms
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