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alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

aut

trivial repository to allow me to test out various CI tools

bbl

Working repo for Berkeley Biolabs Bioinformatics Series 2014

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bcbio-nextgen-vm

Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines

biopython

Official git repository for Biopython (converted from CVS)

blasr

BLASR: The PacBio® long read aligner

chanjo

Chanjo provides a better way to handle sequence coverage data in clinical sequencing.

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

common-workflow-language

Repository for CWL Specfications

configuration

curio

curio: a rare, unusual, or intriguing object. Let's explore SNPs

cuttlefish

A repository in support the Biocurious's Cuttlefish project

cuttlefishwranglin

Studying the RNA Editing capabilities of Sepia bandensis (dwarf cuttlefish)

d3py

a plottling library for python, based on D3

django-extensions

This is a repository for collecting global custom management extensions for the Django Framework.

ease

EASE (Enhanced AI Scoring Engine) is a library that allows for machine learning based classification of textual content. This is useful for tasks such as scoring student essays.

edx-ora

edX ORA (Open Response Assessor) allows for the peer, instructor, and AI assessment of problems on the edX platform.

edx-platform

the edX learning management system (LMS) and course authoring tool, Studio

elasticluster

flashcards

harbinger

hgvs

Python library to parse, format, validate, normalize, and map sequence variants

import_test

what's a good way to import an existing git repo

incubator

incubator for useful scripts

lab-onboarding

labs

Scripts for the PH525x: Data Analysis for Genomics

ml-service-api

The ML service API allows anyone to use machine-learning based automated classification.

natcap

Using the repo to develop some contributions to the Natural Capital project.

opportunity

a web application dedicated to helping people find jobs