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abcd_diffusionmri_pipeline

code for processing and analyzing diffusion MRI data from the ABCD dataset

afq

Automated Fiber Quantification

alccue_scripts

scripts for processing data from the cue reactivity study (specifically for alcohol dependent patients sample)

alignvolumedata

ants

Advanced Normalization Tools (ANTs)

atlases

Digital atlases

betaseriescorrelationtutorial

This goes through the steps for conducting a beta series correlation analysis on fMRI data, which is a measure of functional connectivity. It includes Matlab code and a sample dataset.

colorsublime-plugin

Plugin for Color Sublime

connacctome-pipeline

code to identify and characterize white matter tracts important for motivation and affect

cueexp_scripts

dti_scripts

scripts for processing dti data

fmri_timecourse_example

fmrieat

code to process data for the project, fmrieat

friendengine

FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC repository

glm_fmri_analysis

matlab functions for fmri analysis

glmdenoise

ios-button-fun

A simple example of an iOS application with button interaction.

iterm2-color-schemes

Over 150 terminal color schemes/themes for iTerm/iTerm2 (with ports to Terminal, Konsole, PuTTY, Xresources, XRDB, and Terminator)

knkutils

MATLAB utility functions written by Kendrick Kay

life

MatLab routines for evaluating the quality of white-matter connectomes generated using diffusion-weighted imaging.

lyman

An ecosystem for analyzing neuroimaging data in Python

matlab_scripts

A collection of matlab scripts mostly written by other people

mid_processing_example

analyze fMRI data from 2 subjects performing the Monetary Incentive Delay (MID) task

mindsetbtviewer

Processing script to view and log EEG data sent from the NeuroSky MindSet over Bluetooth

mrq

mrQ_BoxJoinBox

nibabel

Python package to access a cacophony of neuro-imaging file formats

nicotinecue

scripts for analyzing data from the nicotine cue project

nipype

Workflows and interfaces for neuroimaging packages

pipedream

PipeDream - open source neuroimaging pipelines

planets

repository from SW Workshop