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bioseq-gfn-al

Code for "Biological Sequence Design with GFlowNets", 2022

bmdca

Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).

dcama

This is the official implementation of the ECCV'2022 paper "Dense Cross-Query-and-Support Attention Weighted Mask Aggregation for Few-Shot Segmentation".

deepsequence

A generative latent variable model for biological sequence families.

dmasif

eb_gfn

Code for our paper "Generative Flow Networks for Discrete Probabilistic Modeling"

evmutation

Mutation effects predicted from sequence co-variation

gflownet

Generative Flow Networks

neural_potts_model

Neurally-derived Potts models for protein design, inspired by dTERMen

protst

Camera-ready repo for ProtST

reprogbert

Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"

tranception

Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"

tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.