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adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

caffe

Caffe: a fast open framework for deep learning.

conmeds

BIOMEDIN 212 group project: concomitant medications

eigenfaces

STATS 315B project: eigenfaces

five-dollar-genome-analysis-pipeline

Workflows used for germline short variant discovery in WGS data

gatsby-starter-netlify-cms

glow

An open-source toolkit for large-scale genomic analysis

hail

Scalable genomic data analysis.

hello-world

home-security

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

js-scala

js.scala: JavaScript as an embedded DSL in Scala

lfa

logistic factor analysis

mass

:exclamation: This is a read-only mirror of the CRAN R package repository. MASS — Support Functions and Datasets for Venables and Ripley's MASS. Homepage: http://www.stats.ox.ac.uk/pub/MASS4/

quail

Live Q&A app for the classroom

r-source

R Source Code

simplejob

snpeff

spark

Lightning-fast cluster computing in Java, Scala and Python.

spark-1

Apache Spark - A unified analytics engine for large-scale data processing

spark-website

Apache Spark Website

stanford-beamer-presentation

This is an unofficial LaTeX Beamer presentation template for Stanford University.

stanford-latex-poster-template

Stanford LaTeX poster template

stanford_s23_bmi212_example

tech-talks

This repository contains the notebooks and presentations we use for our Databricks Tech Talks

terastructure

TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer.

zeldatron

Don't worry about it.