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kapsner Goto Github PK

followers: 40.0 following: 128.0 repos: 57.0 gists: 0.0

Type: User

Bio: Medical Data Scientist.

Location: Erlangen, Germany

Blog: https://orcid.org/0000-0003-1866-860X

Hi there, I'm Dr. Lorenz Kapsner 👋

About me

🧁 Interests: Medical Informatics | Statistics | Machine Learning | R | Python
🧑‍💼 I'm a Medical Doctor (M.D.) and Medical Data Scientist
🏗️ Author and maintainer of several R packages, including autonewsmd, mlexperiments, sjtable2df, BiasCorrector, and more
🎓 Publications: PubMed, ORCID
🔬 Kaggle Notebook Expert

Technologies/ Tools

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Languages

I am a passionate R programmer and also like coding with Python (sometimes using both languages at the same time via the fabulous R package reticulate). My development environment is completely containerized with different base containers for different tasks (e.g. data science, computer vision, bioinformatics, GPU-computation, etc.; publicly available on my GitHub).

kapsner's Projects

authors-block

Quarto extension that brings author blocks to docx documents

autonewsmd

Auto-Generate Changelog using Conventional Commits

baseapp

A basic shiny app in an R package

biascorrector

R package providing a shiny GUI to the functions implemented in rBiasCorrection

ce_mip_artifact_detection

demo-kafka-spark-pipeline

dicom-fhir-converter

Converts DICOM Resources to FHIR Resources

dicom-fhir-extension

diztools

Mirror of https://gitlab.miracum.org/miracum/misc/diztools

dizutils

Mirror of https://gitlab.miracum.org/miracum/misc/dizutils

docker_images

docker images for data science

dqa-mdr-connector

Fork from https://gitlab.miracum.org/miracum/dqa/dqa-mdr-connector

dqagui

Mirror of https://gitlab.miracum.org/miracum/dqa/dqagui

dqastats

Mirror of https://gitlab.miracum.org/miracum/dqa/dqastats

dqastats2ship-dataset

Tutorial for setting up a metadata repository for a dataset to be analyzed with DQAstats

dwi_mip_artifact_classifier

expenditr

fastshap

Fast approximate Shapley values in R

fhir-gateway

A thin layer between FHIR REST clients and resource processing pipelines.

github-readme-stats

:zap: Dynamically generated stats for your github readmes

gpu-jupyter

Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.

healthcareai-r

R tools for healthcare machine learning

kapsner

kdry

Kapsner's "Don't repeat yourself"-collection

khelper

labvisualizer

Mirror of https://gitlab.miracum.org/miracum/labor/labvisualizer

latent-diffusion

High-Resolution Image Synthesis with Latent Diffusion Models

ldm-ce-mip-lesions

lightgbm.py

lightgbm R package, using the python module via reticulate

lua-filters

A collection of lua filters for pandoc

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