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cancersubtypes

dellachiara_et_al_2021

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

kakawill46

Config files for my GitHub profile.

luad-picnic

Project for the course "Data and Computational Biology" at Università degli Studi di Milano-Bicocca, made with @illoxian

osca

The package wrapping the book, for deployment via the Bioconductor build system.

protics

Analysis of prognostic association between immune cell types and cancer subtypes

r-code-glioma

R code glioma mRNA vaccine

rsem_with_limma_edger_deseq2

scrna.seq.course

Analysis of single cell RNA-seq data course

scrna_10x

shiny-iatlas

An interactive web portal for exploring immuno-oncology data

survival_prescreening

Find the optimal supervised (p-value univariate Cox model) and unsupervised (IQR) thresholds for gene expression pre-filtering in the Cox model with penalization (i.e. ridge, lasso, elastic net, adaptive elastic net, univariate Cox).

survival_seq_depth

Script use for the paper "Optimal miRNA sequencing depth to predict cancer patient survival"

tcga-gtex-analysis-pipline

Bioinformatics analysis of TCGA and GTEx RNA-seq data

tcgabiolinks

TCGAbiolinks

tcgaimmune

Datasets for TCGA immune subtypes

tcgaworkflowdata

Example data to TCGAWorkflow

tumor-immune-cell-atlas

Code repository for the Tumor Immune Cell Atlas (TICA) project