kadepettie Goto Github PK
Type: User
kadepettie's Projects
abc-enhancer-gene-prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
bbmap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
fraser_code
Commonly used code from the Fraser Lab
gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
hic
Analysis of Chromosome Conformation Capture data (Hi-C)
hic-pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
hichip_peaks
A tool to analyse HiChIP data
mike_tools
My little python functions that I use often enough to warrant their own repo
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
nucleoatacr
R package for reading in & working with NucleoATAC outputs
popabc
Code for analyses in Pettie et al. (submitted)
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