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jwrth Goto Github PK

followers: 4.0 following: 6.0 repos: 9.0 gists: 0.0

Name: Johannes Wirth

Type: User

Company: Institute of Pathology, Technical University Munich

Bio: PostDoc at the Institute of Pathology, Technical University Munich, leveraging expertise in single-cell spatial transcriptomics to address clinical questions.

Twitter: johwirth

About me

Interested in interdisciplinary research between biology 🧬, chemistry 🥼 and bioinformatics 💻. Currently working in the field of spatial transcriptomics 🗺️.

I am seeking for collaborators and groups to explore innovative approaches for utilizing multi-omics data with direct implications for solving clinical problems💊.

Johannes Wirth's Projects

cellpose icon cellpose

a generalist algorithm for cellular segmentation

jwrth icon jwrth

Config files for my GitHub profile.

mofax icon mofax

Work with trained factor models in Python

pyhgnc icon pyhgnc

A Python package to access and query data provided by HGNC-approved gene nomenclature, gene families and associated resources including links to genomic, proteomic and phenotypic information.

scanpy icon scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

spapros icon spapros

Probe set selection for targeted spatial transcriptomics.

xdbit_toolbox icon xdbit_toolbox

Analysis pipeline for multiplexed Deterministic Barcoding in Tissue (xDBiT)

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