Comments (3)
Can you also send me the running command? It is best if you share the hic and assembly files with me and I can help you solve the problem locally. @mushroomOK
from autohic.
From the preliminary judgment of the log, it seems that you used the genome.fasta
file as the input of assembly
from autohic.
Thank you for your prompt response! After further investigation, I have confirmed that I used "genome.fasta" as the input for the "-asy" parameter, which was the root cause of the problem.
from autohic.
Related Issues (20)
- Hello author, I have configured the environment and files. Started running, but kept reporting the following error HOT 13
- error report HOT 12
- Run in cpu mode , a error hadd occur, please help fix it. HOT 1
- Files in chromosome directory HOT 1
- The number of obtained chromosomes does not match the actual count HOT 1
- Could you mind giving a detailed, step-by-step pipeline for onehic.py? HOT 2
- Add Options for Pore-C Data HOT 1
- File XXXX/autohic_results/3/XXXX.final.hic cannot be opened for reading HOT 13
- IndexError: cannot do a non-empty take from an empty axes. HOT 2
- How to resume operation after interruption. HOT 5
- Why does the result after autohic adjustment look worse than the result before adjustment, and how should this situation be adjusted HOT 3
- issue with docker: [fputs] No space left on device ***! Alignment HOT 8
- Failure during chimera handling HOT 2
- fewer chromosomes HOT 4
- usage of onehic HOT 1
- usage of autohic: Extending AutoHiC to other assembly software HOT 5
- singularity build error HOT 5
- error with onehic.py HOT 1
- CUDA version HOT 6
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from autohic.