Related Issues (20)
- Randomized tests occassionally fail
- Randomized tests occasionally fails
- DNA complexity tests sometimes fail
- Preferrably tests short tests in automated CI
- Understand why some designs fail to assemble
- Clean up integration IO for DASi
- Better Integration between Aquarium <> Terrarium <> DASi <> {Benchling, SynBioHub}
- DASi should issue a warning for highly complex repetitive sequences before transformation into bacteria
- JSON Schema display in Sphinx should be more condensed
- Find invalid assemblies
- Attach notes to edges when efficiency is adjusted in Graph post processing
- Information about input sequences should be present in
- Add examples module users can pull from to test out DASi
- Users should be able to control thresholds for valid primer pairs
- Annotations on SeqRecords are not being carried through to output.
- Designs should keep record of errors (instead of raising Exception)
- Long Gibson Assembly Parameters should be different than short gibson assemblies
- dasi.exceptions.DasiSequenceDesignException: Sequence is cyclic but there are no precessors for AssemblyNode(index=0, expandable=True, type='A', overhang=False)
- better parallelization HOT 1
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