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2016-08-16-vostok

altair-catplot

Utility to generate plots with categorical variables using Altair.

arviz

Exploratory analysis of Bayesian models with Python

aws_demo_mystery_distribution

A demonstration of using Stan to sample out of a mystery distribution

bebi103

Utilities for BE/Bi 103

bebi103_ami_setup

Shell script to set up a BE/Bi 103 AMI.

bebi103_update

Scripts to update Amazon Machine Image for BE/Bi 103

bi1x

Utilities for Bi 1x

bi1x-vdj

Analysis for V(D)J experiment in Caltech Bi 1x

biocircuits

Utilities for Caltech course BE 150

biological-circuit-design-colab

bioscrape_distr

BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)

bokeh-catplot

Utilities to make Bokeh plots involving at least one categorical variable.

bootcamp

Caltech Introduction to Programming for the Biological Science Bootcamp

bootcamp_utils

Utilities for the Introduction to Programming in the Biological Sciences Bootcamp

caltech_be_typical_schedule

Working document: Caltech BE typical schedule

dataframed-plot-examples

Example plots accompanying DataFramed podcast

dc_stat_think

Utility functions used in the DataCamp Statistical Thinking courses.

dd-pol

Courses at Dresden Physics of Life Center

demo_repo

Demonstration of version control, bootcamp Caltech 2022

demo_repo_2023

Demonstration purposes only

distribution-explorer

Tool for exploring probability distributions.

distribution-explorer-app

App to explore probability distributions

dna_utils

Utilities for analyzing DNA sequences (live code 2023)

ecdfs_and_ppc

Notes on data display

ensemble_sampler_failure_mode

Demonstration of how ensemble sampling can fail in high dimensions

epfl_bootcamp_demo

eqtk

Equilibrium Toolkit (EQTK)

eqtk.github.io

EQTK documentation website

fish-activity

Parsing and plotting tools for fish activity assays.