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awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

biogeography

biotindeficiency

Scripts used in biotin deficiency project

bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

chart-doctor

Sample files to accompany the FT's Chart Doctor column

coloncancerproject

data-science-ipython-notebooks

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

ds-cheatsheets

List of Data Science Cheatsheets to rule the world

easyamplicon

Easy Amplicon data analysis pipeline

fast-16s-analysis

Shell scripts for executing 16S analysis quickly

gutsmash

gutSMASH

julianneyang.github.io

machine_learning_complete

A comprehensive machine learning repository containing 30+ notebooks on different concepts, algorithms and techniques.

metagenomicsonhoffman

Jacobs Lab UCLA : Preprocess shotgun metagenomics data on the UCLA supercomputer

minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

ml-for-beginners

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

moonwalk

A fast & minimal Jekyll blog theme with clean dark mode

neumorphism

Neumorphism designed Jekyll theme for personal websites, portfolios and resumes.

pdbehavior

Web app to view different behavioral data

q22

Scripts and data files accompanying publication

slcproject

Data from the SLC project

srst2_py3

Short Read Sequence Typing for Bacterial Pathogens

transcriptomicsonhoffman

Walks through installation and usage of FASTQC, MultiQC, Trimmomatic, and Salmon for transcriptomic data preprocessing. Includes Grid Engine shell scripts that can be looped over many files in a directory.

w17.machinelearning