Comments (2)
splaisan
commented on August 16, 2024
1
Thanks @jsh58 ,
There is indeed info there but as for building new tables from Aviti data, the explanations in your manuscript are far from enough, even with the provided python scripts.
A full tutorial, including R commands would be necessary in order to reproduce this published data.
Could you by any chance share such a full command code so that I can run it on aviti data (we have phiX reads in sequences obtained from Illumina libraries) and produce new tables?
If I succeed in this, I will be happy to contribute the resulting tables here.
Thanks in advance
from ngmerge.
jsh58
commented on August 16, 2024
I believe this has been addressed before in #4
from ngmerge.
Related Issues (20)
- qual_profile HOT 1
- doesn't easily install on Mac OS HOT 2
- NGmerge failing if read IDs are indicated by a forward slash HOT 2
- no adapter removal with dovetailed alignments HOT 2
- Reads are good but throws error: "Sequence/quality scores do not match" HOT 4
- is there any option for batch processing? HOT 1
- bioconda install HOT 2
- Merging problem HOT 3
- feature request: use false positive rate instead of error rate? HOT 2
- Documentation Requested for Custom Quality Profile
- Error! Input file does not follow fastq format HOT 2
- (bio)conda recipe needs to be updated
- Error! not matched in input files HOT 2
- support for Bash process substitution HOT 3
- Error! Quality scores outside of set range HOT 1
- Error! sample: unknown command-line argument HOT 2
- Error! -2 cannot open file for reading HOT 1
- feature request: ubam input/output? HOT 1
- Undertanding how merged read when bases unmatched HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from ngmerge.