josephfauver Goto Github PK
Name: Joseph Fauver
Type: User
Company: Yale School of Public Health
Bio: Medical entomologist/parasitologist/virologist. I deal in pathogens mosquitoes transmit. YSPH.
Location: New Haven, CT
Name: Joseph Fauver
Type: User
Company: Yale School of Public Health
Bio: Medical entomologist/parasitologist/virologist. I deal in pathogens mosquitoes transmit. YSPH.
Location: New Haven, CT
Shell script used to generate consensus genomes (viral) from amplicons via Primal Scheme
Nextstrain build for Bourbon virus (BRBV) genomes collected from the U.S.
RNA-Seq data used to generate de novo transcripts from Capillaria like worm eggs in human stool
Pipeline for builds
Nextstrain build for Heartland virus sequencing
github practice
Pipeline used to identify SNPS in Loa loa genomes from DRC compared to References
This pipeline describes how to generate (viral) consensus genome sequences from metagenomic sequencing data on Yales YCGA Ruddle Cluster
Series of programs used to assemble and analyze the genome of the filarial parasite, Brugia malayi, using only MinION data
Workflow to build custom Nextstrain builds for Nebraska DHHS
Nextstrain build for Oklahoma
Ruddle environment setup
Code and data for saliva seq paper
Files for server setup
Data for Mu study
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