Comments (1)
Done, had conversation with DanB about how the necessity of tracking allele roots and their retention through vector transmissions means that we will need unique identity given to ParasiteCohorts that may contain identical allele values but from unique allele roots in the simulations
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Related Issues (20)
- Define a quantitative endpoint for what is "good enough" in Garki sites for 1to1 biting changes HOT 1
- Testing Parasite Genetics with Recombination
- Initializing parasite genomes from distributions HOT 1
- Validate the assumption of random strain for var gene sets per genome from literature HOT 1
- Test new exe for comparison of Garki to base HOT 7
- Test immune variation behavior in Garki context HOT 2
- Test immune variation behavior in Garki context: replicates
- Long run genetic behavior demonstration of FPG
- Write function for creating campaign with specified MAFs HOT 2
- Update the parameter value defaults in Regression test
- Write SQL Report analyzer HOT 1
- Test new exe with SQL Report bug fix on Belegost
- meeting with Jessica about FPG outputs as IBD inputs HOT 4
- point Dan to FPG git repo for emodpy dev
- Sweep the neighborhood size to demonstrate the dynamic range of relatedness structures for epi outcomes
- Run Long term genetics example sweeps HOT 1
- Update wiki with post on crossover models
- Read up on current state of IBMs for DR
- 5/5 Gates Review HOT 1
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