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Jordy's Projects

basicphylo icon basicphylo

Is a tool to place WGS data of a Mycobacteria sample into a general Mycobacteria phylogeny.

binning icon binning

Use for bayesian integration studies. To optimize integration with use of continuous data measurements of each dataset needs to be grouped in bins based on their value compared to the positive predictive geneset and/or the negative predictive geneset

easyseq_covid19 icon easyseq_covid19

Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Genome Sequencing kit.

hombaampc icon hombaampc

Homoplasy-based analysis on FOX resistant ESBL negative Escherichia coli.

mycodentifier icon mycodentifier

Nextflow pipeline to identify TB and NTM species from NGS data.

sigbio-proficiencytest icon sigbio-proficiencytest

this repo contains all template sheets that were used in the proficiency test for WGS outbreaks

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