jordangumm Goto Github PK

anaquin

Statistical analysis of sequins in C++ and R

arg_identifier

A workflow that accelerates RGI ARG-like sequence identification

argraph

graph database to facilitate analysis and comparison of ARG databases and metagenomic calls

autodrep

simple dRep runner wrapper script with automated dependency build

autofizkin

Fizkin fork optimized for performance and easy integration into automated runs

automaxout

A Python library for automatically training a Maxout Network

boxfer

Python Click-based CLI for transferring to and from Box accounts

crepe

CREPE: A Convolutional REpresentation for Pitch Estimation -- pre-trained model (ICASSP 2018)

fasth

FAST Heuristics for querying fasta/fastq files

kaggle_mania

March Mania Machine Learning Experiments

marvel

MARVEL: Metagenomic Analyses and Retrieval of Viral ELements

merge_columns_backend

metago

Experimental metagenomic workflow

metago_demo

neuralnetworkexperiments

Markdown Neural Network (NN) tutorials created for learning purposes. They could be beneficial for those wishing to learn about NN.

nntutorials

Neural Network Tutorials

nucompress

A python library for dynamic genomic sequence compression

omics_16s

Base workflow for setting up OTU analysis from Illumina fastq(s)

para_dtwostar

Parallel d2* Wrapper of VirHostMatcher

pyflow

A lightweight parallel task engine

pyflux

A pyFlow extension for automated scientific workflows on the Flux cluster

pyleup

A python tool for creating static visualizations of NGS reference read pileups

rgi

Resistance Gene Identifier (RGI)

singularity_recipes

slurm_test

configuration files for slurm cluster testing grounds

supylearner

An implementation of the SuperLearner algorithm in Python based on scikit-learn.

textbook_learning

A collection of Jupyter notebooks that follow my learning from textbooks

ubiquitoushealthpromotion

A potential research avenue prompted by observations in a literature review conducted in Ubiquitous Computing course at CMU

utils

A place to keep some scripts I routinely use

web_terminal

A base terminal application that can easily be extended