jokendo-collab Goto Github PK
Name: Javan Okendo
Type: User
Company: National Human Genome Research Institute
Bio: Bioinformatics scientists
Twitter: javan_okendo
Location: Bethesda, Maryland, USA
Name: Javan Okendo
Type: User
Company: National Human Genome Research Institute
Bio: Bioinformatics scientists
Twitter: javan_okendo
Location: Bethesda, Maryland, USA
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
A console-based alignment viewer
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
An unbiased comparison of peptide identification performance between SEQUEST, Mascot, and X!Tandem (circa 2013).
bioBakery tools for meta'omic profiling
The neovaginal microbiome of transgender women post-gender reassignment surgery
This repo contains my Candida auris Bioconductor package which I created for my the functional enrichment analysis of proteomics data
This repo contain the scrips I used to analyze SARS-COV-2 variants from the republic of South Africa.
The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version control with git, provides links to GitHub, gives Bioconductor advice, and lays out the process of submitting to Bioconductor.
Crystal-C: A computational tool for refinement of open search results
List of Computer Science courses with video lectures.
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
Customized protein database construction
deduplicate FASTA and FASTQ files
DiviSSR is a tool for ultrafast identification of microsatellites based on simple arithmetic
Model and predict short DNA sequence features with neural networks
This Snakemake pipeline implements the GATK best-practices workflow
Scripts for DO metagenomic analyses
Docker container for the star aligner
This repository contains all the scripts used to assemble and annotate the Earwig genome
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
Publication-ready volcano plots with enhanced colouring and labeling
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
Foreign Contamination Screening caller scripts and documentation
The ARTIC field bioinformatics pipeline
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
Genomic Pipelines (Mapping + Variant Calling) from NGS Data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.