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aced-bioinfo

alphamap

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

amr

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

asms-2013_search-engine-comparison

An unbiased comparison of peptide identification performance between SEQUEST, Mascot, and X!Tandem (circa 2013).

bacterialbioinformatics

biobakery

bioBakery tools for meta'omic profiling

birse_etal_neovaginal-microbiome

The neovaginal microbiome of transgender women post-gender reassignment surgery

candida_aurispackage

This repo contains my Candida auris Bioconductor package which I created for my the functional enrichment analysis of proteomics data

covid19_collaboration

This repo contain the scrips I used to analyze SARS-COV-2 variants from the republic of South Africa.

createapackage

The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version control with git, provides links to GitHub, gives Bioconductor advice, and lays out the process of submitting to Bioconductor.

crystal-c

Crystal-C: A computational tool for refinement of open search results

cs-video-courses

List of Computer Science courses with video lectures.

csbb-shiny

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

customprodbj

Customized protein database construction

divissr

DiviSSR is a tool for ultrafast identification of microsatellites based on simple arithmetic

dna-nn

Model and predict short DNA sequence features with neural networks

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

do_metagenomics

Scripts for DO metagenomic analyses

docker-star

Docker container for the star aligner

earwig_genome_project

This repository contains all the scripts used to assemble and annotate the Earwig genome

emg-viral-pipeline

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

enhancedvolcano

Publication-ready volcano plots with enhanced colouring and labeling

epiforbioworkshop2021

fcs

Foreign Contamination Screening caller scripts and documentation

fieldbioinformatics

The ARTIC field bioinformatics pipeline

flowcraft

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

genomicpipeline

Genomic Pipelines (Mapping + Variant Calling) from NGS Data

gfastats

A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.

gganatogram

Create anatograms using ggplot2

ggprism

ggplot2 extension inspired by GraphPad Prism