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3dprintyourbrain

How to 3D print your brain from a T1 MRI image.

bctpy

brain connectivity toolbox for python

bids-validator

Validator for the Brain Imaging Data Structure

bidsfeat

butter-fingers

A python library to generate highly realistic typos (fuzz-testing)

canlabcore

Core tools required for running Canlab Matlab toolboxes.

designefficiency

django-skeleton

Skeleton to start with a fresh Django project

effectsizeestimation

fair_ml

flora

Code for my pet robot.

fmri-analysis-vm

A VM setup for use in fMRI analysis and education

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

hcp_download

Script to download data from the Human Connectome Project, HCP-1200 subjects release.

hcppipelines

heudiconv

little helper to ease DICOM conversion to ready-to-share folder with heuristics

infomap-docker

This repository contains a docker file to analyse neuroimaging data with infomap

locfdr-python

Python implementation of Efron, Turnbull, and Narasimhan's R function locfdr v1.1-7, which computes local false discovery rates. See http://cran.r-project.org/web/packages/locfdr/ for more information.

mriqc

The package provides a series of image processing workflows to extract and compute a series of NR (no-reference), IQMs (image quality metrics) to be used in QAPs (quality assessment protocols) for MRI (magnetic resonance imaging).

myconnectome

MyConnectome meets Joy Division

myconnectome_fmriprep

Code used to run fmriprep on MyConnectome

neurodestest

neuropower

sample size calculations for fMRI

neuropower-validation

Code used to validate the power and sample size calculations in neuropower

neuropower_new_ideas

neuropowertools

Long overdue update of neuropower v0

neurovault

Easy to use web database for statistical maps.

nipy

Neuroimaging in Python FMRI analysis package

nipype

Workflows and interfaces for neuroimaging packages

niworkflows

Common workflows for MRI (anatomical, functional, diffusion, etc)