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awesome

collection of awesome lists

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bio-tool

cellphonedb

content

Experimental repo of bio.tools content for augmentation with other sources of tool information

dandelion

dandelion - A single cell BCR-seq analysis package for 10X Chromium 5' data

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

dl-anti-osteoporosis

Deep learning enables discovery of highly potent anti-osteoporosis natural products

dleps

A Deep Learning based Efficacy Prediction System for drug discovery

endoscopydepthestimation-pytorch

Pytorch implementation of paper named "Dense Depth Estimation in Monocular Endoscopy with Self-supervised Learning Methods" (TMI)

graph-learn

graph-learn

graph_nets

Build Graph Nets in Tensorflow

mdnnmd

An implementation of multimodal deep neural network, a new model for human breast cancer prognosis prediction.

multimap

MultiMAP for integration of single cell multi-omics

nasal_polyps_scrna-seq

network-biology-and-artificial-intelligence

pathogentrack

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

python_biologist

Python Programming for Biologists

pytorch_geometric

Geometric Deep Learning Extension Library for PyTorch

scgan

Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks

scgnn

scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks

science_gutatlas

This is repository for data preprocessing and analysis of the human gut single-cell data performed by me and under review in Science.

scrna-seq

scrnagan

Training Generative Adversarial Network models for scRNA-seq datasets

tf-gnn-samples

TensorFlow implementations of Graph Neural Networks

tiramisu

Keras implementation of The One Hundred Layers Tiramisu: Fully Convolutional DenseNets for Semantic Segmentation

training-material

A collection of Galaxy-related training material

ulcerative_colitis